PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.386060.1
Common NameARF10a, Csa_6G141390, LOC101216500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 717aa    MW: 79038.5 Da    PI: 8.634
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.386060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.1e-23112213199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +  ++
  Cucsa.386060.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR--SK 202
                     89****************************997556555..8************************************************4..47 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  Cucsa.386060.1 203 NGDLCVGIRRA 213
                     8888****996 PP

2Auxin_resp117.51.1e-38281364183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa  a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Cucsa.386060.1 281 AAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 364
                     678899****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-37104216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-28105217IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-21111212No hitNo description
PROSITE profilePS5086313.07112214IPR003340B3 DNA binding domain
SMARTSM010192.7E-22112214IPR003340B3 DNA binding domain
PfamPF023627.9E-22112213IPR003340B3 DNA binding domain
PfamPF065071.4E-33281364IPR010525Auxin response factor
PROSITE profilePS5174518.643604684IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MKEAEKILDP QLWHACAGGM VQMPAINSKV FYFPQGHAEH AQATVDFTSS LRIPPLIPCR  60
VLAVKFLADL ETDEVFANVR MVPLPNSDLN FEEEGGFGSS GSENNMEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR SKNGDLCVGI RRAKRAIGCA SDHPYGWNPG GGNCIPPYGG  240
LTMFLRDDDN KLSRKGSLSS SGSGGNLRGK GKVRPESVME AAALAASGQP FEVVYYPRAS  300
TPEFCVKASS VRAAMRIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPIRWPNSPW  360
RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PVIQLSPFSP PRKKFRLPQH PDFPLDSQFP  420
LSSSFSSNTL RPSSPMCCLS DNTSVGIQGA RHTQFGISLS DFHLNNKLQL GLVPSSFQQI  480
DFHSRISNRS VTDHRDSSSH NSSVLQNGEK TGPKLERSDS VKKHQFLLFG QPILTEQQIT  540
CSSSSDIRSP PTEKSSSDVN LERVKFLSHG SGSTFKQQVS PNKSPGVGFP WYQGYQATEL  600
GLDIGHCKVF MESEDVGRTL NLSVISSYEE LYRRLANMFG MEKPDILSHV LYQDATGAVK  660
QAGDKPFSDF IKTARRLTIL TDSGSDKLGR TLMDGMRSGE NGLDASNKTG PLSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-70738550388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8433420.0KC843342.1 Cucumis sativus auxin response factor 10a (ARF10a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275525.10.0auxin response factor 18-like
RefseqXP_011656307.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLS5G1J20.0S5G1J2_CUCSA; Auxin response factor
STRINGVIT_06s0004g02750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]